PUBLICATIONS
Upadhyay A*, Rowland J C, Cardenas G P, Tokuda I, Webb A A R, Locke J CW*; Data-driven mathematical modeling elucidates the role of ELF3 in wheat circadian clock. Cambridge University (under review) 2024
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Burt P., Grabe S., Madeti C., Upadhyay A., Merrow M., Roenneberg T., Herzel H., Schmal C.; Principles underlying the complex dynamics of temperature entrainment by a circadian clock. iScience 11, 103370, 2022
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Upadhyay A.; Molecular switches facilitate rhythms in the circadian clock of Neurospora crassa. (Doctoral Thesis). Humboldt University of Berlin, Germany, 2021
(Cumulative thesis for Dr. rer. nat. or Ph.D)
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Upadhyay A., Marzoll D., Diernfellner A., Brunner M., Herzel H.; Multiple random phosphorylations in clock proteins provide long delays and switches. Sci. Rep. 10(1), 1-13, 2020
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Upadhyay A., Brunner M. and Herzel H.; An inactivation switch enables rhythms in a Neurospora clock model. Int. J. Mol. Sci., 20(12), 2985, 2019
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Meng Y., Guo Z., Fitzer S. C., Upadhyay A., Chan V. B. S., Li C., Cusack M., Yao H., Yeung K. W. K., and Thiyagarajan V.; Ocean acidification reduces hardness and stiffness of the Portuguese oyster shell with impaired microstructure: a hierarchical analysis, Biogeosciences, 15(22), 6833-6846, 2018
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Upadhyay A., Thiyagarajan V., Tong Y.; Proteomic characterization of oyster shell organic matrix proteins (OMP) Bioinformation, 12(5), 266-278, 2016
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Upadhyay A.; Proteomic characterization of oyster shell organic matrix proteins. (Masters Thesis). University of Hong Kong, Hong Kong, 2015
(Master of Philosophy)
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Upadhyay V., Chaturvedi S. and Upadhyay A.; A mathematical model on effect of stenosis in two phase blood flow in arteries remote from the heart, J. Int. Aca. Phys. Sci., 16 (3), 247-257, 2013
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Upadhyay A.; In silico molecular docking analysis against the Haemophilus influenzae R2846 strain.
(Thesis). MITS, India, 2012
(BEng-thesis)
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Note:
"6" peer-reviewed journal articles published (1st authored: "3" & co-authored: "3").
"3" thesis published (bachelor's master's, doctoral).
"2" manuscripts under preparation.
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Science communications
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Member of the The Luxuriant Flowing Hair Club for Scientists™ (LFHCfS), 2021.
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Upadhyay A.; How a switch between doing science and playing soccer with PhD supervisor motivates my research, Medium, 2020.
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Upadhyay A.; Modelling molecular clocks in fungi, NatureVolve, 5-8, 2019.
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